PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr022508.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family G2-like
Protein Properties Length: 545aa    MW: 59648.9 Da    PI: 6.8964
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr022508.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.46.6e-28228282156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k +++WtpeLH+rFv+aveqL G +kA+P++ilelm+v++Lt+++++SHLQkYR++
  Pbr022508.1 228 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGVDCLTRHNIASHLQKYRSH 282
                  5689*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.908225284IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-27226285IPR009057Homeodomain-like
SuperFamilySSF466892.51E-18226285IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-26228282IPR006447Myb domain, plants
PfamPF002496.3E-8231280IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MLLLSPLTEG RHHHQLKDEK QLGDDGDVES SFAFNGGNTT VLDFPEFSGG MGMGNLLDSI  60
DFDDLFIGIH DGDVLPDLEM DSEILDFSVP APADDINTKT TPPPPSKEEE EVADDYYNTT  120
KTTTTSSKVE DQEEEDLHGH GEVAAAAVSI TSTNNNSGLN QNYSSSSTTT PPDNRGDQEI  180
VSKRDDINQI RAAYRPSSGS TRRKSADHKL ATKSSPTAQS KKSHGKRKVK VDWTPELHRR  240
FVQAVEQLGV DKAVPSRILE LMGVDCLTRH NIASHLQKYR SHRKHLLARE AEAASWTQRR  300
QMYGAAAAAG GGAGPKSRRD VMMMNNPNWL NAPTIGFPSI TSTTPPPMHH AQHHRQLIRP  360
LHVWGHPTMD QSMMHMWPPK HHLAHHFPPP VLPSPPPAPA HAWPPGPPPP PDASYWHHPH  420
SHHQRAPDAP TPGAPCFPRQ QLAAPTVTNH SLQQRFHTPP VPGIPPHAMY KVEPAGIAAP  480
TPPQSGLHLL LDFHPSKESI DAAIGDVLSK PWLPLPLGLR PPATDTVMVE LQRQGVQKFP  540
PSCA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-15225280257ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr022508.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018502530.10.0PREDICTED: probable transcription factor GLK1 isoform X1
TrEMBLA0A498HB960.0A0A498HB96_MALDO; Uncharacterized protein
STRINGXP_009354290.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42423461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.14e-76GBF's pro-rich region-interacting factor 1