PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr022635.2

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

YABBY

Protein Properties

Length: 191aa MW: 21056.6 Da PI: 8.3067

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr022635.2	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	234.9	1.8e-72	4	164	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekls 102 +se+vCyv+CnfCntilavsvP +s++++vtvrCGhC++llsvn+ + q ++ h ++ k++l e+ + +n+ s ++++s+s++ + ++ Pbr022635.2 4 MASERVCYVHCNFCNTILAVSVPCNSSMNMVTVRCGHCANLLSVNIGGSLQSTTIPPH-QDPQKQHLSSEDSN--KNCGSSSSSSSSKSNKFGH-AFE 97 579****************************************************9.44445555554443..3444444444333333333.446 PP YABBY 103 enedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + e ++ pr+ p i PPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Pbr022635.2 98 SLELHDQPRISP-INPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 164 677888899888.89*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	9.6E-73	5	164	IPR006780	YABBY protein
SuperFamily	SSF47095	2.23E-8	107	157	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.0E-5	112	158	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MDLMASERVC YVHCNFCNTI LAVSVPCNSS MNMVTVRCGH CANLLSVNIG GSLQSTTIPP 60 HQDPQKQHLS SEDSNKNCGS SSSSSSSKSN KFGHAFESLE LHDQPRISPI NPPEKRQRVP 120 SAYNRFIKEE IQRIKASNPD ISHREAFSTA AKNWAHFPHI HFGLKLDANR EPKLDQAFAG 180 EGTQKSNGFY *

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr022635.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ694015	2e-46	FJ694015.1 Dimocarpus longan YAB2-2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008382120.2	1e-129	putative axial regulator YABBY 2 isoform X3
Swissprot	Q9XFB0	6e-81	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A498KH72	1e-123	A0A498KH72_MALDO; Uncharacterized protein
TrEMBL	D9ZJG5	1e-123	D9ZJG5_MALDO; YABBY domain class transcription factor
STRING	XP_009378606.1	1e-124	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	3e-75	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]