PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr022708.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 313aa    MW: 34819.5 Da    PI: 4.5413
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr022708.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-1978126355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  Pbr022708.1  78 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 126
                  9*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.29E-2277135IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-3277135IPR001471AP2/ERF domain
PROSITE profilePS5103223.64477134IPR001471AP2/ERF domain
SMARTSM003806.3E-3977140IPR001471AP2/ERF domain
PRINTSPR003678.2E-127889IPR001471AP2/ERF domain
CDDcd000184.25E-3378135No hitNo description
PfamPF008473.2E-1278126IPR001471AP2/ERF domain
PRINTSPR003678.2E-12100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MCGGAIISDF IPRDRRPRVT ASDIWPDSPF AKFNPDTFFD CNPTPTTHTD SNPRKKSQPI  60
SGNVQEEKPA KRQRKNLYRG IRQRPWGKWA AEIRDPRKGV RVWLGTFNTA EEAARAYDRE  120
ARKIRGNKAK VNFPNEDDDL PAQTYLRKPN PPLFQPKSFE LGFEYDLNQF AAFPSNSNSD  180
GFNSMAIANT DPIVISGEES SWSGSDGAFS SKGFLGCNQN GMGGCHGGAE LTEVEETQEG  240
ELSLEAIARM EDDEVQKLSE ELMAYENMMK FYQIPYLDGQ SMAAPQNPPP QESTVGDDLW  300
SFDNDEGVPA SV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2178134360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A3e-21781361574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr022708.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324740.0GU732474.1 Malus x domestica AP2 domain class transcription factor (AP2D50) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378746.10.0PREDICTED: ethylene-responsive transcription factor ERF073-like
TrEMBLA0A498K5850.0A0A498K585_MALDO; Uncharacterized protein
STRINGXP_009378746.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.13e-36ERF family protein