PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr022939.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

M-type_MADS

Protein Properties

Length: 160aa MW: 18469.5 Da PI: 10.4979

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr022939.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	64.2	1.4e-20	11	63	3	50
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.....EEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.....klyeys 50 i n++ r++tf kR +gilKKA E+S+LCd +v++ii+++++ +l++++ Pbr022939.1 11 ITNERARKTTFQKRTKGILKKAGEISTLCDLDVCMIIYGPKQsgrspELHTWP 63 89*************************************98744444577776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	18.726	1	51	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.5E-18	1	62	IPR002100	Transcription factor, MADS-box
CDD	cd00266	6.29E-18	2	79	No hit	No description
SuperFamily	SSF55455	7.72E-22	2	98	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-10	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.2E-18	11	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-10	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-10	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MGRGRLNMEL ITNERARKTT FQKRTKGILK KAGEISTLCD LDVCMIIYGP KQSGRSPELH 60 TWPRNPSEVN RIINKYKAST TCKPAKKTFN LSDLLMDRKT KVHVDTYRAR KEMYEAKYPT 120 WDERIENFSE NELELLLNAL DAKLEAGKRT LLPKRKRPA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr022939.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009354489.1	1e-115	PREDICTED: agamous-like MADS-box protein AGL82
TrEMBL	A0A498KCQ2	4e-91	A0A498KCQ2_MALDO; Uncharacterized protein
STRING	XP_009354489.1	1e-114	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF534	31	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	5e-24	M-type_MADS family protein