PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr023092.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 250aa    MW: 27362.4 Da    PI: 6.5048
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr023092.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79e-057496123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C + F++   L  H+++H
  Pbr023092.1 74 YTCKFCRREFRSAQALGGHMNVH 96
                 9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.15E-671101No hitNo description
SMARTSM003550.00717496IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.13674101IPR007087Zinc finger, C2H2
PfamPF139121.8E-57497IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MAELGLLSRT DLQNLPLLQQ NQHQIQLSSP NLVPKAWMWN PKPVQEPEDD SWEVRAFAED  60
TSNVMGTTWP PRSYTCKFCR REFRSAQALG GHMNVHRRDR ARLHQSHPQM NPAAISSAST  120
SSFIIPTQEL VNRNGGLCLV YQLPSPSSIN DASFNTATTL MSSSSTNGHV VESSPSTLLS  180
VSPNIPPHDY LVSVVPPAGR SNSNSQYCHS NKSSAHDDPE PLTSGTENGN FEELDLELRL  240
GHGRPAIPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-136996229superman protein
2l1o_A5e-136996229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr023092.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378985.10.0PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A498HL361e-166A0A498HL36_MALDO; Uncharacterized protein
STRINGXP_009378985.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-38C2H2 family protein