PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr023346.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 228aa    MW: 24643.9 Da    PI: 8.0079
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr023346.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.92e-39181181100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC k+C++apyf aeq +++fa+vhk+FGasn +kll ++p+++r da+ +l+yeA ar+rdPvyG++++i++lqqq+ +l+aela++
  Pbr023346.1  18 PCGACKFLRRKCIKGCIFAPYFDAEQgTAHFAAVHKVFGASNASKLLLRIPPHKRLDAVVTLCYEALARVRDPVYGCASHIFTLQQQVVNLQAELAYV 115
                  7***********************9989*********************************************************************9 PP

       DUF260  98 kee 100
                  +++
  Pbr023346.1 116 QAR 118
                  976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.29117119IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3718116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MSGSSSNGNN DNGGGGGPCG ACKFLRRKCI KGCIFAPYFD AEQGTAHFAA VHKVFGASNA  60
SKLLLRIPPH KRLDAVVTLC YEALARVRDP VYGCASHIFT LQQQVVNLQA ELAYVQARLG  120
TLQRFPLPPQ PPQLEIPPPT RSLQYSSSNI NVTSSSSSDM VPTPNILTHC DPLQAPNTSS  180
EMSSLFNTED QELIDGENLQ ALAREFVCRY LPGVRLNKSS GSHHQNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-38141127104LOB family transfactor Ramosa2.1
5ly0_B5e-38141127104LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr023346.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009379264.11e-169PREDICTED: LOB domain-containing protein 19
SwissprotO813221e-68LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A498KKD91e-147A0A498KKD9_MALDO; Uncharacterized protein
STRINGXP_009379264.11e-168(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.15e-61LOB domain-containing protein 19