PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr023382.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 210aa    MW: 23618.4 Da    PI: 5.8441
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr023382.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000342951123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C+ C++ F++   L  H+++H
  Pbr023382.1 29 FACSFCKREFRSAQALGGHMNVH 51
                 78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.47E-62655No hitNo description
PfamPF139122.2E-62952IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.0112956IPR007087Zinc finger, C2H2
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MLKGSRSVDC INFFEGENLC DNSWTTRNFA CSFCKREFRS AQALGGHMNV HRRDRARLRL  60
LPPTLSSEIC PQNPSPNPSS YFSTSSSSSL SPCHSLFSPS LRTLVSTPSS ASSMDENKKP  120
RYDYSPENHF PDLIPKKGMG GGVDHEAGQI FKGFSQRDDE YFNKIDPEEE NKIIRVDLEL  180
HLDLDLDLDI GLLKDHKEEV DLELRLGHL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr023382.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028965823.11e-102transcriptional regulator SUPERMAN-like
TrEMBLA0A498IVP95e-94A0A498IVP9_MALDO; Uncharacterized protein
STRINGXP_009379308.11e-153(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1696368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.13e-12C2H2 family protein