PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr023444.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WOX
Protein Properties Length: 238aa    MW: 27188.5 Da    PI: 8.374
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr023444.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.27.7e-201069357
                 --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 +R+++t+eql  Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  Pbr023444.1 10 SRWCPTPEQLMLLEEMYRAgIRTPNASQIQHITAQLsfygKIEGKNVFYWFQNHKARDRQ 69
                 8*****************99*************************************996 PP
2Wus_type_Homeobox117.85e-38870264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       +++RW+PtpeQ+++Lee+y++G+rtPn+++iq+ita+L+ yGkie+kNVfyWFQN+kaR+rqk
        Pbr023444.1  8 SSSRWCPTPEQLMLLEEMYRAGIRTPNASQIQHITAQLSFYGKIEGKNVFYWFQNHKARDRQK 70
                       689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.479570IPR001356Homeobox domain
SMARTSM003896.0E-5774IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-71069IPR009057Homeodomain-like
PfamPF000461.7E-171069IPR001356Homeobox domain
SuperFamilySSF466892.78E-111069IPR009057Homeodomain-like
CDDcd000862.22E-51170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSPAANSSSS RWCPTPEQLM LLEEMYRAGI RTPNASQIQH ITAQLSFYGK IEGKNVFYWF  60
QNHKARDRQK LRRKLCKQLQ QQQLLYHHHN NHDYPNYHCH QQLNQQSFLD YLESPPPASS  120
ALHHPQLSTC HHHDNYSSTG FLPPQVGVED ALINYTWKMT IPEKVEMEKS VMSMHGRDWM  180
MNVGPPSPCC TSSRSTATTS RPPLKTLQLF PTTATNLKEE STPSYNAPSS STPTENY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in the lateral sepal axis-dependent development of flowers, probably by regulating the proliferation of L1 cells at the lateral region of flower primordia. Required for the formation of the margin cells of the first and second whorl organs. {ECO:0000269|PubMed:11751640, ECO:0000269|PubMed:15169755}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr023444.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354530.11e-179PREDICTED: WUSCHEL-related homeobox 3-like
SwissprotQ9SIB47e-44WOX3_ARATH; WUSCHEL-related homeobox 3
TrEMBLA0A498IQP41e-141A0A498IQP4_MALDO; Uncharacterized protein
STRINGXP_009354530.11e-179(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106322940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-35WOX family protein
Publications ? help Back to Top
  1. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  2. Niu L, et al.
    LOOSE FLOWER, a WUSCHEL-like Homeobox gene, is required for lateral fusion of floral organs in Medicago truncatula.
    Plant J., 2015. 81(3): p. 480-92
    [PMID:25492397]
  3. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  4. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]