PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr023528.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 251aa MW: 27132.7 Da PI: 8.2193

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr023528.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.5	1.3e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C++ C+l+p++ p++q +++ +v+k+FG++ ++++++a+p+++r+ +++sl++eA+ r+ +Pv+Gavg++++++++++q+++e Pbr023528.1 2 SCNGCRVLRKGCSDTCMLRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPDSQRPVLFQSLLFEACGRTINPVNGAVGLLWTGNWHVCQAAVE 99 6***********************************************************************************************99 PP DUF260 94 lall 97 ++l+ Pbr023528.1 100 TVLR 103 8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.505	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.5E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MSCNGCRVLR KGCSDTCMLR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPDSQR 60 PVLFQSLLFE ACGRTINPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPI PELLGGASTP 120 DEASEADVGG VTISTDMWRL RDLSHNSGSS SRFTSSRSAR ASSPKRKRSA AADESSTKLL 180 QLQQHADLDL QLTPTPSFKP KPKPETRRPG TPSMNSDESG VTTCFESGFE DQHPYSYAVG 240 TERKLLNLFP *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr023528.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009379314.1	0.0	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9FN11	9e-87	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A498I0N0	1e-165	A0A498I0N0_MALDO; Uncharacterized protein
STRING	XP_009379314.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	3e-78	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]