PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr023720.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family CPP
Protein Properties Length: 229aa    MW: 25678.8 Da    PI: 6.0852
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr023720.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR39.11.5e-1289128241
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                   +k+CnC++skClk+Y eCf+ag++C ++  C++C Nk e
  Pbr023720.1  89 ACKRCNCRRSKCLKLYFECFSAGVYCLDSYACQNCYNKPE 128
                  589**********************************975 PP
2TCR23.51.2e-07177195220
          TCR   2 ekkgCnCkkskClkkYCeC 20 
                  +k+gCnCkkskCl kYCe 
  Pbr023720.1 177 HKRGCNCKKSKCLEKYCER 195
                  799**************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011145.9E-988129IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163419.79589222IPR005172CRC domain
PfamPF036381.5E-891126IPR005172CRC domain
SMARTSM011140.079176205IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.9E-4178194IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSETAINPRD GKAEEELLRF TFEKVKEPCT NTDLVSGAQN CGKTAAKPLC GSRHLMLVDL  60
EADPCDAGMS PSQDTDSINK NKEPYTSEAC KRCNCRRSKC LKLYFECFSA GVYCLDSYAC  120
QNCYNKPEFE HTVSEIHHHI ESRNPLAFTS KVVDNAIDSS ANSTEDQNLT TPSSAGHKRG  180
CNCKKSKCLE KYCERHQVYM YIFTLHFSVS PASETWCFSE FIELDLDK*
Functional Description ? help Back to Top
Source Description
UniProtProbable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:9043081, ECO:0000269|PubMed:9725857}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr023720.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020414497.12e-62protein tesmin/TSO1-like CXC 3 isoform X6
RefseqXP_020414498.11e-62protein tesmin/TSO1-like CXC 3 isoform X7
RefseqXP_020414499.19e-63protein tesmin/TSO1-like CXC 3 isoform X8
SwissprotQ9LUI31e-35TSO1_ARATH; CRC domain-containing protein TSO1
TrEMBLA0A251PXA53e-62A0A251PXA5_PRUPE; Uncharacterized protein
STRINGXP_008228663.14e-64(Prunus mume)
STRINGEMJ178947e-61(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF142771417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.15e-38Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Lu T,Dou Y,Zhang C
    Fuzzy clustering of CPP family in plants with evolution and interaction analyses.
    BMC Bioinformatics, 2013. 14 Suppl 13: p. S10
    [PMID:24268301]
  2. Xie W, et al.
    Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach.
    Front Plant Sci, 2015. 6: p. 829
    [PMID:26528302]
  3. Wang W,Sijacic P,Xu P,Lian H,Liu Z
    Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(13): p. E3045-E3054
    [PMID:29535223]