PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr023936.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 233aa    MW: 25166.7 Da    PI: 6.4896
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr023936.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.73.4e-42771761100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++kll++lpe++r da+ss+vyeA+ar+r+P+yG++g i++lq+q+ +l+a+la+++
  Pbr023936.1  77 PCAACKILRRRCAEKCVLAPYFPPNEPLKFTIAHRIFGASNIIKLLQELPESHRADAVSSMVYEANARIRNPIYGCAGAIFQLQKQIGELQAQLAKAQ 174
                  7***********************************************************************************************99 PP

       DUF260  99 ee 100
                  +e
  Pbr023936.1 175 AE 176
                  87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.03976177IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-4177174IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEFDAKTTTT MSPPPFSYSP SSSPSSPITA SFPSPNSHPL SNLSSPHAAA SNNISTNPLP  60
TSLSPPPPPP PPVVLSPCAA CKILRRRCAE KCVLAPYFPP NEPLKFTIAH RIFGASNIIK  120
LLQELPESHR ADAVSSMVYE ANARIRNPIY GCAGAIFQLQ KQIGELQAQL AKAQAELANL  180
QCQQGNMIAL ICMDMTQSKE EAILQQQQSN YIDTSCFLDE NNSGTAWEPL WT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-41691883122LOB family transfactor Ramosa2.1
5ly0_B4e-41691883122LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr023936.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009333736.11e-169PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR03e-71LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A498JHL71e-123A0A498JHL7_MALDO; Uncharacterized protein
STRINGXP_009333736.11e-169(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130334106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-58LOB domain-containing protein 1