PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr024078.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 214aa    MW: 22587.4 Da    PI: 10.0225
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr024078.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.4e-20117166255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  ++ G+r+++ +g+W+AeIrdp+    + kr +lg+f+taeeAa+a+++a + l+g
  Pbr024078.1 117 RFVGIRRRP-WGKWAAEIRDPN----QgKRLWLGTFDTAEEAAAAYDRASLMLRG 166
                  789******.**********93....24*********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.30E-30116174No hitNo description
PROSITE profilePS5103223.499117174IPR001471AP2/ERF domain
PfamPF008471.5E-13117166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-30117174IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22117174IPR016177DNA-binding domain
SMARTSM003807.3E-34117180IPR001471AP2/ERF domain
PRINTSPR003678.6E-10118129IPR001471AP2/ERF domain
PRINTSPR003678.6E-10140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MSTVQINRSA ANSDVRFSKQ TTALAKLVIR ETPNPPRNPR IQPKLVRIIH ADADATDSSS  60
DDNEDSVVPT VKRRVREINL EVSLPSSASS SPPCSGRPKL SKRAKLQPKS GPDGEKRFVG  120
IRRRPWGKWA AEIRDPNQGK RLWLGTFDTA EEAAAAYDRA SLMLRGPRAV TNFPGAGETV  180
VADEVVAAAE VGHGEGGGAV AAVGGGEGAA DCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-21116174463ATERF1
3gcc_A6e-21116174463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr024078.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324270.0GU732427.1 Malus x domestica AP2 domain class transcription factor (AP2D3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009333963.11e-153PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A0H3YBC21e-102A0A0H3YBC2_9ROSA; Transcription factor ERF8
STRINGXP_009333963.11e-152(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2749723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-21cytokinin response factor 2