PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr024079.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GATA
Protein Properties Length: 272aa    MW: 29853 Da    PI: 6.0743
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr024079.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.31.6e-16227262134
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C++Cgt +  Tp++Rrgpdg++tLCnaCGl+++ k 
  Pbr024079.1 227 CRHCGTNEkcTPMMRRGPDGPRTLCNACGLMWANKA 262
                  ********************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.4E-1080115IPR010399Tify domain
PROSITE profilePS5132014.05180115IPR010399Tify domain
PfamPF062006.6E-1285114IPR010399Tify domain
PROSITE profilePS5101713.225151193IPR010402CCT domain
PfamPF062032.3E-15151193IPR010402CCT domain
SMARTSM004011.4E-6221266IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-10224261No hitNo description
CDDcd002027.50E-13226261No hitNo description
Gene3DG3DSA:3.30.50.107.2E-13226261IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440227254IPR000679Zinc finger, GATA-type
PfamPF003202.8E-14227263IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDNISGGDAP MHMSDEVHLQ YMQEHEHHQG LHQMSNGNGV TDDHDDGSGA DTGGAELSEV  60
NVQSEPMNLS DTRSGMVDHS GNNGDQLTLS FQGQVFVFDS VSPEKVQAVL LLLGGHEVPP  120
GMPAVPVTTQ HDNRFNQALT SIPQRLSVPQ RLASLIRFRE KRKERNFDKK IRYTVRKEVA  180
LRMQRKKGQF TSSKPNSDDS ASAITSWGSN ENLDQDGNGS IPQEAVCRHC GTNEKCTPMM  240
RRGPDGPRTL CNACGLMWAN KAHDGDDFWN G*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr024079.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009333965.10.0PREDICTED: GATA transcription factor 24-like isoform X1
RefseqXP_018498001.10.0PREDICTED: GATA transcription factor 24-like isoform X2
SwissprotQ8GXL71e-101GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A498J0271e-177A0A498J027_MALDO; Uncharacterized protein
STRINGXP_009333964.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136512325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-103ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]