PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr024084.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 106aa MW: 11897.3 Da PI: 4.3267

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr024084.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	44.6	4.1e-14	1	55	46	100
DUF260 46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +++lp + re+a++s++yeA r++dPvyG+v++i++lq+++ ++++e+ +++ + Pbr024084.1 1 MQQLPVHLREAAADSMFYEASLRVEDPVYGCVRIISQLQHHILEVQSEILKTNGQ 55 689999*****************************************99887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.467	1	56	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.3E-13	1	51	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
MQQLPVHLRE AAADSMFYEA SLRVEDPVYG CVRIISQLQH HILEVQSEIL KTNGQIASYI 60 AQQQLQQQQQ NVVDGASYQQ DMQICEYLGV GSDVQTLAND SYFHP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr024084.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009333972.1	7e-70	PREDICTED: LOB domain-containing protein 24-like
TrEMBL	A0A498HEA6	4e-43	A0A498HEA6_MALDO; Uncharacterized protein
STRING	XP_009333972.1	3e-69	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3697	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	5e-14	LOB domain-containing protein 24