PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr024123.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 397aa    MW: 42663.1 Da    PI: 5.9409
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr024123.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-19195244255
          AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrd +     + +r++lg+f tae Aa+a+++a+++++g
  Pbr024123.1 195 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFETAEAAAQAYDQAALRFRG 244
                  7********.**********66.....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.8E-32195253IPR001471AP2/ERF domain
PfamPF008472.7E-13195244IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-22195253IPR016177DNA-binding domain
PROSITE profilePS5103225.396195252IPR001471AP2/ERF domain
SMARTSM003802.3E-35195258IPR001471AP2/ERF domain
PRINTSPR003672.9E-11196207IPR001471AP2/ERF domain
CDDcd000181.22E-14203254No hitNo description
PRINTSPR003672.9E-11218234IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MCVLKVANSR GNNDQRAARR TNIEEGQGGH HNIGEWLNEP LLISHQQRQR AGGGESGILG  60
SAASSMLLQL DWEREMSAMV SALTHVVAGD ENEVAAAGVN SDSRTSSWGS VGTKRGREEE  120
EEEEGGGGGP LSESVTRLCR AFDEFPQHIQ GPSSAFGEGL STRTTTTAIP PTPSPTPSSR  180
YVYSAPEIAE PIRRRYRGVR QRPWGKWAAE IRDPFKAARV WLGTFETAEA AAQAYDQAAL  240
RFRGNKAKLN FPENVRLLSS TAVPPPTQLS NSAPQNTLLS VATSCEPIVH SQAFHSSDEV  300
PSTSRNLVSY SELVDMQRQP MSLYDQMVLS SSAVAEAAAS SSSSSSSLSP PPLSSLFGAR  360
SWLPVGPSVS DNSTSTTDFP MQQWSSYAQY TTPSSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-23194255466ATERF1
3gcc_A5e-23194255466ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr024123.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009333767.20.0PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A498I0G10.0A0A498I0G1_MALDO; Uncharacterized protein
STRINGXP_009342801.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-28ethylene response factor 110