PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr024139.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

FAR1

Protein Properties

Length: 233aa MW: 26328.8 Da PI: 8.3169

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr024139.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.3	8.4e-26	54	143	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY++YA+++GF +r+ + ++s+ +++i +r++ C+k+g r+ + ++ ++ rr++++t gCka++ vk++k+gkw++t+++++H+H+l Pbr024139.1 54 EFYEDYARRAGFIMRIGQCRRSHVEKRILSRKLSCNKQGGRSVKARDqVRSVRRPQPTTGEGCKAMMLVKLKKSGKWVITRVVKDHTHPL 143 6**************************************99998845567889*******************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.0E-25	54	144	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MEHRFDRRPR PWLGLIGSDP KSPGAPETSV ERDLNAVGEP YVGMEFESED AAKEFYEDYA 60 RRAGFIMRIG QCRRSHVEKR ILSRKLSCNK QGGRSVKARD QVRSVRRPQP TTGEGCKAMM 120 LVKLKKSGKW VITRVVKDHT HPLIVSSGNS MDAKDMKIAE LTLDLEREEQ LCGQYRELLL 180 TLLNNVEEET EDIATKVRGV VNYVREFETQ VEGIPENQME SSSRASSKSN GD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr024139.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009334239.1	1e-173	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A498IX10	1e-128	A0A498IX10_MALDO; Uncharacterized protein
STRING	XP_009334239.1	1e-172	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-54	FAR1 family protein