PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr024145.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 651aa    MW: 74274.8 Da    PI: 8.8246
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr024145.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-08593637345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                       W++  ++ lv+a k ++++   +W+++a+ ++ g++  qck ++ 
      Pbr024145.1 593 VWSAVQEKALVQALKTFPKDaaqRWERVAAAVP-GKSVVQCKKKFA 637
                      7********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1108.6E-2293198IPR001623DnaJ domain
SuperFamilySSF465651.7E-2094202IPR001623DnaJ domain
SMARTSM002716.5E-1595170IPR001623DnaJ domain
PfamPF002261.4E-1896175IPR001623DnaJ domain
PROSITE profilePS5007618.65396178IPR001623DnaJ domain
CDDcd062573.90E-1396167IPR001623DnaJ domain
PRINTSPR006257.5E-9101119IPR001623DnaJ domain
PRINTSPR006257.5E-9119134IPR001623DnaJ domain
PRINTSPR006257.5E-9150170IPR001623DnaJ domain
PROSITE patternPS006360155174IPR018253DnaJ domain, conserved site
PROSITE profilePS512936.008459514IPR017884SANT domain
SMARTSM007172.3E-4460513IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-6462505IPR009057Homeodomain-like
CDDcd001670.00216463503No hitNo description
PROSITE profilePS5129310.724589644IPR017884SANT domain
SMARTSM007179.2E-8590642IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-4592647IPR009057Homeodomain-like
SuperFamilySSF466891.5E-8592647IPR009057Homeodomain-like
PfamPF002494.4E-7593636IPR001005SANT/Myb domain
CDDcd001677.16E-6594640No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MPFQSKFRLI SYSQELVDGQ PLYASSNCLP VKALNHEPAG HSFHAVALKL RGCVEEKKEV  60
EDGKVVNNKE QTSIPSFDSY SSKGKKKSGG EGKEQDHYAL LGLSHLRYLA TEEQIRKSYR  120
ETALKYHPDK QASLLLNEET EAAKQTKKDE IEGHFKSIQE AYEVLIDPVK RRIYDSTDEF  180
DDEIPTECAP QDFFRVFGPA FMRNGRWSVT QPIPFLGDEN TPLKEVDNFY DFWYTFKSWR  240
EFPHADEFDL EQAESRDHKR WMERQNAKLS EKARKEEYAR IRTLVDNAYK RDPRIQRRKE  300
AEKAEKQRKK EAKYMAKKLQ EEEAARAAEE ERRRKEEDAK RAAETALQQK KLKEKEKKLL  360
RKERARLRTI SGPVTSKLLL NLSEDDVESL CSSLGTEQLR SICEKMEGKE GLQRAEVLRD  420
ACGYKDDLVG KKEEEKKAEQ QNGSVKSNGT VQLASYEKKE EKPWSREEIE LLRKGMVKFP  480
KGTSRRWDVV SDYIGTGRSV EEILKATKTV LLQKPDSSKA FDSFLEKRKP SPSIASPLTT  540
RVEVEGVPTT QAHETAAEKT DEAGESSSLS AKDQTPTDPI VENGLLSGSE QDVWSAVQEK  600
ALVQALKTFP KDAAQRWERV AAAVPGKSVV QCKKKFALLK ESFRNKKSTA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A2e-1918529613124Zuotin
5dje_B2e-1918529613124Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331352RRRKEEDAKRAAETALQQKKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr024145.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009334242.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLA0A498IXF10.0A0A498IXF1_MALDO; Uncharacterized protein
STRINGXP_009334242.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06110.20.0DnaJ domain ;Myb-like DNA-binding domain