PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr024467.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 231aa    MW: 24972.9 Da    PI: 8.5911
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr024467.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.9e-203079255
          AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa++ l+g
  Pbr024467.1 30 RYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARILRG 79
                 69*******.**********883....5***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.0113087IPR001471AP2/ERF domain
PfamPF008472.7E-123079IPR001471AP2/ERF domain
SMARTSM003809.1E-353094IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-223089IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-313087IPR001471AP2/ERF domain
CDDcd000181.41E-173089No hitNo description
PRINTSPR003678.9E-113142IPR001471AP2/ERF domain
PRINTSPR003678.9E-115369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MRRGRGAATR PAAPPAEPTG SRPCIGKEVR YRGVRKRPWG RFAAEIRDPW KKTRVWLGTF  60
DSAEDAARAY DAAARILRGP KAKTNFQISC AYPSFYNNPT DPAIEAKLFG SGYGFQDHPA  120
VDPQRPASSS LSSTVESFSG PRPPLQSMTV AAELTRRKRQ PRTPPVVPED CHSDCDSSSS  180
VVEDDGDFVA SSSFRKAPLP FDLNFPPLDV DGESGGGVDG QDLRCTALCL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-192086471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00366DAPTransfer from AT3G20310Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr024467.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324290.0GU732429.1 Malus x domestica AP2 domain class transcription factor (AP2D5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009334154.11e-167PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotQ9LDE42e-55ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A498IL651e-164A0A498IL65_MALDO; Uncharacterized protein
STRINGXP_009334154.11e-166(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.14e-29ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]