PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr024552.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 94aa    MW: 10726.2 Da    PI: 6.8027
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr024552.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-071340128
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIa 28
                     +g+WT eEd+ll + ++ +G g W+ ++
      Pbr024552.1 13 KGAWTREEDDLLRQSIEIHGEGKWHQVP 40
                     79**********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.761173IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.7E-101142IPR009057Homeodomain-like
SuperFamilySSF466894.38E-71242IPR009057Homeodomain-like
PfamPF002495.9E-61340IPR001005SANT/Myb domain
CDDcd001672.14E-51539No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MEGYNVNLSV MRKGAWTREE DDLLRQSIEI HGEGKWHQVP YRAVSPAPSA LLSSQLLSVP  60
QREELERQWT LLLFLPNHFY QSAQPKLRDG ALP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr024552.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7439992e-56AB743999.1 Malus domestica MYBP mRNA for MYB transcription factor, complete cds, cultivar: JPP35.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66380.13e-12myb domain protein 114