PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr024837.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 153aa    MW: 17184.8 Da    PI: 9.573
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr024837.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.21.5e-13411301097
                  HHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  10 vlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  + +++rl++pk+ ae+h   + +++   + ++d++gr+W++++  ++++ +  yvl+ G +++   n+ ++gD v F+++  se++l ++ +
  Pbr024837.1  41 HPNNARLIIPKRAAEAHfpAIREKQRLPIAMRDSTGREWRFTYVCWRNGMTvmYVLE-GLNGYMLINQWRAGDKVAFHRIV-SEGKLQIRTI 130
                  34569**************555556667***************88888888767777.********************775.7777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-1330121IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-1230131No hitNo description
Gene3DG3DSA:2.40.330.101.9E-1730126IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.5E-431133IPR003340B3 DNA binding domain
PROSITE profilePS508638.76932133IPR003340B3 DNA binding domain
PfamPF023621.8E-1041130IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MLCKSSSDYV NGKLCETFHI GQDGWVNCTL CSKTITATDT HPNNARLIIP KRAAEAHFPA  60
IREKQRLPIA MRDSTGREWR FTYVCWRNGM TVMYVLEGLN GYMLINQWRA GDKVAFHRIV  120
SEGKLQIRTI KAASSDPPAL AKEQSPTDKN QV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C1e-193013522126B3 domain-containing transcription repressor VAL1
5yzz_C1e-193013522126B3 domain-containing transcription repressor VAL1
5z00_C1e-193013522126B3 domain-containing transcription repressor VAL1
5z00_G1e-193013522126B3 domain-containing transcription repressor VAL1
5z00_K1e-193013522126B3 domain-containing transcription repressor VAL1
5z00_M1e-193013522126B3 domain-containing transcription repressor VAL1
6j9a_A1e-193013523127B3 domain-containing transcription repressor VAL1
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr024837.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A251PMV48e-35A0A251PMV4_PRUPE; Uncharacterized protein
TrEMBLA0A314YWC51e-34A0A314YWC5_PRUYE; B3 domain-containing transcription factor VAL3-like
STRINGXP_008226707.11e-34(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1597856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.17e-20high-level expression of sugar-inducible gene 2