PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr024977.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 248aa MW: 27967.5 Da PI: 5.2245

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr024977.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.1	7.6e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed+ l+d+++ +G g+W+ +++ g++R++k+c++rw++yl Pbr024977.1 14 RGPWTALEDKMLADYIQAHGEGQWSNVPKQAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	40.6	5.8e-13	70	111	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T++E++l+++++k+lG++ W++Ia +++ gRt ++ ++w++ Pbr024977.1 70 ITKDEEDLIIRLHKLLGNR-WSLIAGRIP-GRTKDEIENYWHSN 111 59***************.*****.*********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.9E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.001	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	2.2E-27	11	108	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	3.26E-9	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.8E-19	65	115	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.418	66	116	IPR017930	Myb domain
SMART	SM00717	1.5E-10	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	8.5E-12	70	111	IPR001005	SANT/Myb domain
CDD	cd00167	5.07E-9	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MGRNPCCSKE GVKRGPWTAL EDKMLADYIQ AHGEGQWSNV PKQAGLKRCG KSCRLRWLNY 60 LRPSIKGGDI TKDEEDLIIR LHKLLGNRWS LIAGRIPGRT KDEIENYWHS NLCKKQQEDH 120 ILSCRPSTST EIADTVQQSK VEVHLENDPS CNNNFALGSS MLCNLTDIMA EESETSSGSL 180 LSASKSREED RSSCWENILM EDFHTREMSL SEFLDTDFTK LSNVFGFRMC DVMSNEVLLE 240 GESGYGF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-23	14	115	27	127	MYB TRANSFORMING PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr024977.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009334683.1	0.0	PREDICTED: transcription repressor MYB6-like
TrEMBL	A0A498J8L7	1e-170	A0A498J8L7_MALDO; Uncharacterized protein
STRING	XP_009334683.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	4e-56	myb domain protein 5