PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr024988.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Nin-like

Protein Properties

Length: 374aa MW: 41993 Da PI: 4.4194

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr024988.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.4	8.8e-26	285	335	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++l+dl+ yF+lpi++AA+ L+vc+Tv+KriCR++G++RWP+Rki+s+ Pbr024988.1 285 TANMTLDDLRGYFHLPIQKAARRLKVCPTVVKRICRRNGLNRWPSRKIRSI 335 789**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.871	275	355	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-23	287	335	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MADPRAVVPY DDPYENGLCS DIMNFLYDSE HAILDENVPL PPLDGEGHTC PTNPISLFDE 60 GIQDLDDPLL DQATWDFLNQ CSNGGGNVDS KAGPSQIIGE SSGTSPPRGD NNEQNQGFGD 120 PMPLSVWPAI PVPFNCSCCQ LLREIIHLNG NHVMKFDIHG RFGMISHAIL QSFDVNSSDN 180 HQYQMFDFCK KSIEEVKQFL MQYCLERKLE GYIMQQDPMA IFYEALCVGL EWDDILNTDD 240 FTFPPSPPNS GRAGEAEQQQ PAADQLEAAE DENERISLAA QRERTANMTL DDLRGYFHLP 300 IQKAARRLKV CPTVVKRICR RNGLNRWPSR KIRSINRQIS RLTPSLESDD ANTRVHAEAE 360 ISRLEREIAE LVP*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MADPRAVVPY DDPYENGLCS DIMNFLYDSE HAILDENVPL PPLDGEGHTC PTNPISLFDE  60
GIQDLDDPLL DQATWDFLNQ CSNGGGNVDS KAGPSQIIGE SSGTSPPRGD NNEQNQGFGD  120
PMPLSVWPAI PVPFNCSCCQ LLREIIHLNG NHVMKFDIHG RFGMISHAIL QSFDVNSSDN  180
HQYQMFDFCK KSIEEVKQFL MQYCLERKLE GYIMQQDPMA IFYEALCVGL EWDDILNTDD  240
FTFPPSPPNS GRAGEAEQQQ PAADQLEAAE DENERISLAA QRERTANMTL DDLRGYFHLP  300
IQKAARRLKV CPTVVKRICR RNGLNRWPSR KIRSINRQIS RLTPSLESDD ANTRVHAEAE  360
ISRLEREIAE LVP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr024988.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016647903.1	0.0	PREDICTED: uncharacterized protein LOC107880544
TrEMBL	A0A498JCN8	0.0	A0A498JCN8_MALDO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7478	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	9e-16	Nin-like family protein