PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr025002.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 162aa    MW: 18170.1 Da    PI: 8.8183
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr025002.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.5e-31101159159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDg++WrKYG+K+vk+s++pr+YY+C+  gC+vkk+ver++edp++v++tY g Hnh+
  Pbr025002.1 101 LDDGFRWRKYGKKMVKSSPNPRNYYKCSIGGCHVKKRVERDREDPRFVITTYDGVHNHP 159
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-3288159IPR003657WRKY domain
SuperFamilySSF1182903.01E-2794159IPR003657WRKY domain
PROSITE profilePS5081130.3296161IPR003657WRKY domain
SMARTSM007741.6E-33101160IPR003657WRKY domain
PfamPF031061.4E-23102159IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MSGGNFRLVE SPETNDFSSN LNFEFSEYLM IRKWLDEDPS CVGSEFSVQN SGFRANEVGE  60
SGARSSQPGG STSRGENGSS RKRQEAGDRV AFKTKSEVEI LDDGFRWRKY GKKMVKSSPN  120
PRNYYKCSIG GCHVKKRVER DREDPRFVIT TYDGVHNHPG L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2692158874Probable WRKY transcription factor 4
2lex_A2e-2692158874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr025002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009334707.11e-117PREDICTED: probable WRKY transcription factor 50
SwissprotQ8VWQ53e-43WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLA0A498JCM71e-106A0A498JCM7_MALDO; Uncharacterized protein
STRINGXP_009334707.11e-116(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.11e-45WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]