PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr025042.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Protein Properties

Length: 210aa MW: 23883.9 Da PI: 7.2364

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr025042.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.8	1.7e-17	67	138	17	92
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ++p kf+++h ++ ++ t+tl+ ++gr+W+vk+ ++ +++++ l +GW Fv++n+L++gD++vF l+++sef + Pbr025042.1 67 TVPSKFVNAHLIE--QPSTITLRVSDGRTWRVKVGFQTRGCQF-L-AGWITFVRDNELDVGDVCVFVLINKSEFLF 138 79***999655..6669***********887777775.3.6*******************99888833 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01019	2.3E-8	55	146	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	3.14E-19	66	138	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.0E-18	66	138	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	2.8E-15	67	139	IPR003340	B3 DNA binding domain
CDD	cd10017	4.40E-16	67	139	No hit	No description
PROSITE profile	PS50863	12.393	68	146	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	3.53E-8	159	199	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.6E-6	159	196	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	7.909	163	201	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MKRGHDHVIH RKTPRNHENQ NVDNRGLKGS TYGTRTSQVT TPIQDEGYEA TDDTDSQTLM 60 HPRWLQTVPS KFVNAHLIEQ PSTITLRVSD GRTWRVKVGF QTRGCQFLAG WITFVRDNEL 120 DVGDVCVFVL INKSEFLFEA VFYRKEEAEN HHISSPAGAR GRFIGGWSAF RQDNDLKLDD 180 VCVFVLVNKV ELFEVAFYRK PEAANICAL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr025042.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018501901.1	2e-62	PREDICTED: protein root UVB sensitive 4-like
TrEMBL	A0A498I034	6e-39	A0A498I034_MALDO; Uncharacterized protein
STRING	XP_009351291.1	6e-62	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16060	7	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18090.1	7e-09	B3 family protein