PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr025136.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 215aa    MW: 23339.5 Da    PI: 10.2305
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr025136.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20120169255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrdp     r +r++lg+f taeeAa+a+++a+ +++g
  Pbr025136.1 120 KYRGVRQRP-WGKWAAEIRDP----LRaARVWLGTFETAEEAARAYDKAAVEFRG 169
                  8********.**********7....368***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.304120177IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-33120178IPR001471AP2/ERF domain
SMARTSM003803.5E-37120183IPR001471AP2/ERF domain
CDDcd000186.77E-33120177No hitNo description
PfamPF008479.9E-14120169IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-23120178IPR016177DNA-binding domain
PRINTSPR003671.6E-12121132IPR001471AP2/ERF domain
PRINTSPR003671.6E-12143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MPSRMSRIQQ EQEHCIMVAA LKHVISGGSS SGPTPEHLQP MTAVYNATCT QLAAGQPAQQ  60
EDMLAFWLDG DTCRLCGIPW CLGCNYFPPT LPNRNKKPQL SLGTGFVGMN GATTRKSKNK  120
YRGVRQRPWG KWAAEIRDPL RAARVWLGTF ETAEEAARAY DKAAVEFRGN RAKLNFPLNP  180
DVNIVTSNNS SSSGTGANAG TNPGFANKQK AKKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-24121178664ATERF1
3gcc_A3e-24121178664ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr025136.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324700.0GU732470.1 Malus x domestica AP2 domain class transcription factor (AP2D46) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009367028.11e-161PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLD5L1301e-126D5L130_MALDO; AP2 domain class transcription factor
STRINGXP_009367028.11e-160(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-33redox responsive transcription factor 1