PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr025204.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family SBP
Protein Properties Length: 104aa    MW: 11756.4 Da    PI: 8.6668
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr025204.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP38.53.2e-1265101238
                  -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTE CS
          SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgl 38 
                  C v+gC+ dls+++ey r h+vC+ hsk++vv+v+++
  Pbr025204.1  65 CLVNGCRPDLSRCREYRRWHRVCKLHSKTSVVVVRDE 101
                  *********************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.9E-1160101IPR004333Transcription factor, SBP-box
PROSITE profilePS5114111.24662103IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.31E-1063100IPR004333Transcription factor, SBP-box
PfamPF031102.1E-665101IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MEWDFKDSDL AALVGSSISQ TQMKNKPAES LGLDIKKLEE DPMKVSSSRR INGDNNGSDQ  60
LKVLCLVNGC RPDLSRCREY RRWHRVCKLH SKTSVVVVRD EHI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr025204.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009344929.11e-52PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_018500406.11e-52PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_018500407.11e-52PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_018500408.11e-52PREDICTED: squamosa promoter-binding-like protein 13A
TrEMBLA0A498HKH26e-48A0A498HKH2_MALDO; Uncharacterized protein
STRINGXP_009344927.16e-52(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100312640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-11SBP family protein