PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr025328.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 197aa    MW: 22280 Da    PI: 6.5043
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr025328.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000312244123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C+ C++ F++   L  H+++H
  Pbr025328.1 22 FACSFCKREFRSAQALGGHMNVH 44
                 78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.92E-61948No hitNo description
PfamPF139122.0E-62245IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.0112249IPR007087Zinc finger, C2H2
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MNCINFFEGE NLCDISWATR NFACSFCKRE FRSAQALGGH MNVHRRDRAR LRLLPPTLSS  60
EICPQNPNPS SYFATSSSSS LSSCHSLFSP SLRTRVFAPS SASSMDENKK PRYDYWPENH  120
FPDLIPKKGM GGGVDHEAGH IFKGFSQRDD EYFNKIDLEK ENNIIRVDLG LDLDLDIGLL  180
KDHKEEVDLE LRLGHL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr025328.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354969.11e-145PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A498JQT99e-96A0A498JQT9_MALDO; Uncharacterized protein
STRINGXP_009354969.11e-144(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1696368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-12C2H2 family protein