PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr025352.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 151aa    MW: 16715.3 Da    PI: 5.0946
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr025352.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-191666255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr ++ +g+++AeIrd +    + +r +lg+f taeeAa+a+++a+ +++g
  Pbr025352.1 16 KYRGVRTRP-WGKFAAEIRDSTR---QgARLWLGTFNTAEEAARAYDRAAFSMRG 66
                 7*****999.**********322...24*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-311675IPR001471AP2/ERF domain
PfamPF008471.4E-141666IPR001471AP2/ERF domain
CDDcd000188.88E-291674No hitNo description
SuperFamilySSF541713.79E-231675IPR016177DNA-binding domain
SMARTSM003809.0E-351679IPR001471AP2/ERF domain
PROSITE profilePS5103223.2351674IPR001471AP2/ERF domain
PRINTSPR003675.2E-111728IPR001471AP2/ERF domain
PRINTSPR003675.2E-114056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MERGGKDKEE GQKDMKYRGV RTRPWGKFAA EIRDSTRQGA RLWLGTFNTA EEAARAYDRA  60
AFSMRGPLAI LNFPSEYDLK DAGQSAAAAT TSSSTSSSSS SLSSSSRPHN VTRTESGREI  120
FEFECLDDSV LEDLLDFDDR TKTNEEKQIK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-3511301114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr025352.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF9687651e-163HF968765.1 Malus x domestica metacontig of the Co-Gene region, cultivar Procats28, columnar allele.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354933.11e-107PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC53e-41ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A498JTA91e-83A0A498JTA9_MALDO; Uncharacterized protein
STRINGXP_009354933.11e-106(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-30ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]