PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr025656.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 228aa    MW: 25668.3 Da    PI: 9.8343
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr025656.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.71.1e-211762449
                 -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                  n+sn qvtfskRr g++KKA+EL++LC+aev +i+fs+  k++ +
  Pbr025656.1 17 ANESNLQVTFSKRRSGLFKKASELCTLCGAEVGIIVFSPGRKVFSF 62
                 699************************************9999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-31665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.675666IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.12E-27789IPR002100Transcription factor, MADS-box
CDDcd002653.01E-35775No hitNo description
PRINTSPR004042.6E-18828IPR002100Transcription factor, MADS-box
PfamPF003194.0E-241662IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-182843IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-184364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MARKSKGRQK VEMVKMANES NLQVTFSKRR SGLFKKASEL CTLCGAEVGI IVFSPGRKVF  60
SFGHPSVEAV IDRFLSRNPS NHHLHPTSGT MQLIEAHRNA TVRELNTELT QVMNQLEVEK  120
KRGDQLNQMK RVSQAQCWWE GPVDEMEMPQ LDQLKSSLED LKKNVSKQAD RVLILNTTNP  180
SSHYFVGSSS HQPVIPNVGF NGNHHVMPPH PLPHLDGWNH PAYGHFF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr025656.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009335377.11e-171PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK29e-74AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A498IWI11e-144A0A498IWI1_MALDO; Uncharacterized protein
STRINGXP_009335377.11e-170(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-75AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]