PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr025755.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 216aa MW: 24074.3 Da PI: 8.4063

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr025755.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	91.3	1.2e-28	2	100	1	94
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+++C+l++++ p++q++++ +v+k+FG++ + ++++a++e++r+++++sl++eA r+ +Pv+Ga+g++l+++++++q + e Pbr025755.1 2 SCNGCRVLRKGCSDNCILRQCLqwmedPQAQAHATVFVAKFFGRAGLFSFINAVSESQRPALFQSLLFEAVGRTMNPVNGAMGLLLSGKWEVCQGAME 99 6********************************************************************************************98877 PP DUF260 94 l 94 Pbr025755.1 100 P 100 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.268	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.3E-24	2	98	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MSCNGCRVLR KGCSDNCILR QCLQWMEDPQ AQAHATVFVA KFFGRAGLFS FINAVSESQR 60 PALFQSLLFE AVGRTMNPVN GAMGLLLSGK WEVCQGAMEP VLRGGAVEPL PEYSRDIHYV 120 REHQVREVQR QSTKRKRPNF DVNDNDDYVE NFRSPDLNLS LTSATGLMSR TKRRDCRAAT 180 PSVEHSETTT LGSSSPENNC TAGNLERTKL LRLFI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr025755.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009335387.1	1e-161	PREDICTED: LOB domain-containing protein 38-like
Swissprot	Q9SN23	4e-60	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A498JNH2	1e-151	A0A498JNH2_MALDO; Uncharacterized protein
STRING	XP_009335387.1	1e-160	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	2e-62	LOB domain-containing protein 38