PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr025970.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

M-type_MADS

Protein Properties

Length: 235aa MW: 25806.9 Da PI: 8.4755

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr025970.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	74.1	1.1e-23	21	68	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + en +qvtfskRr+gi+KKA ELSvLC+a+vavi+fs+ gk++ y Pbr025970.1 21 KLENLNSKQVTFSKRRAGIFKKAAELSVLCGADVAVIVFSTAGKVFCY 68 5689999*************************************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.1E-33	12	71	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	26.983	12	72	IPR002100	Transcription factor, MADS-box
CDD	cd00265	5.32E-35	13	80	No hit	No description
SuperFamily	SSF55455	1.7E-27	13	82	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.5E-22	14	34	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	14	68	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-22	22	68	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.5E-22	34	49	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.5E-22	49	70	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MVLLKNLPKK TQGRKRIEIK KLENLNSKQV TFSKRRAGIF KKAAELSVLC GADVAVIVFS 60 TAGKVFCYGH PSVDTILDWY CSGVTPPAVS DDTAGDKSPN RVPVAEFNKE YMEAIRELEE 120 QKKRVAEVKE AAKMKKVVMG VVGGCGERFW WEDESVDLDA LDVQEVEHYL IALEDVRKQV 180 AARLHEMKIL NGTLNPGALP PIPAVHRLCH LPMMTNGFSG HGGQFGGGYH GFGI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n6j_A	1e-15	13	93	1	81	Myocyte-specific enhancer factor 2B
1n6j_B	1e-15	13	93	1	81	Myocyte-specific enhancer factor 2B
1tqe_P	1e-15	13	93	2	82	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-15	13	93	2	82	Myocyte-specific enhancer factor 2B
1tqe_R	1e-15	13	93	2	82	Myocyte-specific enhancer factor 2B
1tqe_S	1e-15	13	93	2	82	Myocyte-specific enhancer factor 2B
6byy_A	1e-15	13	93	2	82	MEF2 CHIMERA
6byy_B	1e-15	13	93	2	82	MEF2 CHIMERA
6byy_C	1e-15	13	93	2	82	MEF2 CHIMERA
6byy_D	1e-15	13	93	2	82	MEF2 CHIMERA
6bz1_A	1e-15	13	94	2	83	MEF2 CHIMERA
6bz1_B	1e-15	13	94	2	83	MEF2 CHIMERA
6bz1_C	1e-15	13	94	2	83	MEF2 CHIMERA
6bz1_D	1e-15	13	94	2	83	MEF2 CHIMERA
6c9l_A	1e-15	13	93	2	82	Myocyte-specific enhancer factor 2B
6c9l_B	1e-15	13	93	2	82	Myocyte-specific enhancer factor 2B
6c9l_C	1e-15	13	93	2	82	Myocyte-specific enhancer factor 2B
6c9l_D	1e-15	13	93	2	82	Myocyte-specific enhancer factor 2B
6c9l_E	1e-15	13	93	2	82	Myocyte-specific enhancer factor 2B
6c9l_F	1e-15	13	93	2	82	Myocyte-specific enhancer factor 2B
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr025970.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009335453.1	1e-175	PREDICTED: agamous-like MADS-box protein AGL62
Refseq	XP_009335460.1	1e-175	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A498KGD9	1e-154	A0A498KGD9_MALDO; Uncharacterized protein
STRING	XP_009335453.1	1e-174	(Pyrus x bretschneideri)
STRING	XP_009335460.1	1e-174	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF128	33	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65360.1	7e-28	AGAMOUS-like 23