PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr026044.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 151aa    MW: 16744.3 Da    PI: 6.3379
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr026044.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.61.4e-106385527
                 --SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                  C++f  tG C+yGd+Ck+ H++
  Pbr026044.1 63 VCNRFVNTGSCPYGDSCKYLHPK 85
                 5********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.8025886IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-75987IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-56085IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-86384IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-86385IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MXXXXXXXXX XXXXXXXXGS IFAITARRNS RTPHLREDAI FKAANTFEPE LNDPNHAYPT  60
KGVCNRFVNT GSCPYGDSCK YLHPKNNQQD TVLIDNNQSS SFQENQSVEG SSLPDVVVRD  120
HTGTSWSNLP PSLMPPPEGG HPRLPFVDWG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr026044.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018498314.13e-71PREDICTED: zinc finger CCCH domain-containing protein 3
TrEMBLA0A498IJG83e-63A0A498IJG8_MALDO; Uncharacterized protein
STRINGXP_009335554.11e-70(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119592833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.14e-29C3H family protein