PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr026073.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 187aa    MW: 21882.5 Da    PI: 9.901
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr026073.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.35.4e-101052244
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 +i n+s r  t+ k r g +KK +E+  LC++  + i++s++ 
  Pbr026073.1 10 FIINNSSRRATLRKMRRGFMKKMYEINKLCEVPTCAIMYSPDE 52
                 6778899999******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-10160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.101161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-18296IPR002100Transcription factor, MADS-box
CDDcd002668.36E-23284No hitNo description
PRINTSPR004045.7E-7323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-91052IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MTRRKVKLAF IINNSSRRAT LRKMRRGFMK KMYEINKLCE VPTCAIMYSP DESQPDFWPD  60
SSGVQRLIEQ FKNMPEGEQN KKMVTHEMLL KQRIKKEQEK LNKLKKENRE RQIRMLMNQC  120
LTGKPLTGLD FNDLEDMGSM INETLKDIVA KIKSRKEEEL VEMDQPSVAQ PPMRASVTDE  180
NFHDTI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr026073.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009335560.21e-119PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A498IJ484e-86A0A498IJ48_MALDO; Uncharacterized protein
STRINGXP_009335560.11e-135(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-36AGAMOUS-like 80