PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr026074.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 226aa    MW: 26130.4 Da    PI: 9.3879
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr026074.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.34.1e-131251342
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 i n+  r+ ++ kR++g  KK +E+S+LCd+ v+ i++s+
  Pbr026074.1 12 IINDACRKASYNKRKKGFVKKMKEISILCDVPVCGILYSQ 51
                 668999********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.1E-13261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.825251IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-20396IPR002100Transcription factor, MADS-box
CDDcd002664.11E-24386No hitNo description
PRINTSPR004041.1E-5424IPR002100Transcription factor, MADS-box
PfamPF003191.1E-111251IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-52439IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAGRKKVKLA YIINDACRKA SYNKRKKGFV KKMKEISILC DVPVCGILYS QYESQPIVWP  60
NPLEVQRLIT QFRNMPEEER NKKMVNHEMF LKQRIEKEQE KLNKLKKENR EKQIRMLMNQ  120
CLAGRPLTDL NLDALNDMDC MIKGSLTEIV TQIKSRKEKE LAEMNQPQVA PPQVLAATTD  180
QNMHAAMETQ VFDQSNIYTK QTVPWFLGDV PNQQFGFADD QIPPL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr026074.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009335561.11e-168PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A498IET81e-163A0A498IET8_MALDO; Uncharacterized protein
STRINGXP_009335561.11e-167(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-32AGAMOUS-like 80