PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr026143.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 299aa    MW: 32733.4 Da    PI: 9.0386
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr026143.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017231253223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +Cp Cg  F++  +L+ H ++ H
  Pbr026143.1 231 VCPQCGAKFPSVTTLVDHVKKvH 253
                  6*******************999 PP
2zf-C2H215.84e-05271292323
                  ETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                  Cp+C+k F+++  L+ H  + H
  Pbr026143.1 271 CPKCSKGFRDPVALVEHVERdH 292
                  *****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183104.32E-890147No hitNo description
Gene3DG3DSA:4.10.1110.109.7E-1196149IPR000058Zinc finger, AN1-type
PfamPF014282.6E-8106146IPR000058Zinc finger, AN1-type
SMARTSM003550.0092230253IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058230253IPR007087Zinc finger, C2H2
PROSITE patternPS000280232253IPR007087Zinc finger, C2H2
PfamPF138944.4E-4232253No hitNo description
PROSITE profilePS501578.829269297IPR007087Zinc finger, C2H2
SMARTSM003557.1269292IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280271292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MVKCSEMFYT FPNGGVMRHI YIAVFHQFQN AIDVWQPKVF CLEHRSYIKH NCPNGDRNNV  60
TVVICPLCAK GVHLIPDEDP NITWERHVNT DCDPSNYEKA TKKKKCPVPG CKEVLTFSNT  120
IKCRDCTVDH CLKHRFGPDH KCPGPKKPEV GFPFMGYLSR SRKEVSKPSH APAASSSKWG  180
SFLTAASSFR ASAEASVAKL SSELSQKWEM AKDGTGPSSS SSGSRSGQVE VCPQCGAKFP  240
SVTTLVDHVK KVHEKGGNRA AGVKKVTIDA CPKCSKGFRD PVALVEHVER DHGGTSRA*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr026143.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009355502.11e-180PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like
SwissprotQ8VZ421e-108SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A498I0S11e-178A0A498I0S1_MALDO; Uncharacterized protein
STRINGXP_009355502.11e-180(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-102C2H2 family protein