PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr026750.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HB-other
Protein Properties Length: 355aa    MW: 39808.3 Da    PI: 6.5147
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr026750.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.67.8e-07631072155
                  HSSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 
                  +n  ps+e    LA+k            ++ +qV +WFqNrR+  
  Pbr026750.1  63 NNTMPSREVLMALADKFsesperkgkiTVQMKQVWNWFQNRRYAI 107
                  488899999999999999999999999999************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.21652110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.1E-653112IPR009057Homeodomain-like
SuperFamilySSF466891.33E-953111IPR009057Homeodomain-like
CDDcd000860.0029654108No hitNo description
PfamPF167197.9E-40163289IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MKASLGDPIA FEGFGIEDLE YISNKTFVPF LILTFSSLLD IKLESANGVC MVTEMEAILQ  60
QYNNTMPSRE VLMALADKFS ESPERKGKIT VQMKQVWNWF QNRRYAIRAK SSKVLGKLDV  120
SPMSRDDLAA ARNVPQGPQQ IAAPVHVPSV PGSGKGAPEN AIFEFEAKSG RDGAWYDVAN  180
FLSHKNLETG NPEVLVRFAG FGPEEDEWVT VRKHVRQRSL PCESSECVAV LPGDLILCFQ  240
EGKEQALYFD AHVLDAQRRR HDVRGCRCRF LVRYVHDQSE EIVPLRKVCR RPETDYRLQQ  300
LHAVNEAISA EQKSMEQYMA SATSGEMMQK QQNAVPPTFH VTASLPTQTT TPEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A7e-451602931134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B7e-451602931134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A7e-451602931134SHH1 SAWADEE
4iur_B7e-451602931134SHH1 SAWADEE
4iut_A7e-451602931134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B7e-451602931134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A7e-451602931134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B7e-451602931134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A7e-451602931134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B7e-451602931134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr026750.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018498432.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X1
SwissprotQ8RWJ71e-132SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A498K6520.0A0A498K652_MALDO; Uncharacterized protein
STRINGXP_009336175.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-121sequence-specific DNA binding transcription factors;sequence-specific DNA binding