PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr026823.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 221aa    MW: 25042.3 Da    PI: 7.6644
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr026823.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.4e-091762653
                 HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
          HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53
                   +E++RR++++  +++L +llP+ +   p++ ls  e   +A++YIks
  Pbr026823.1 17 RVVEKNRRNHLKLLYSKLYSLLPNqN---PKEPLSVNEQIDEAINYIKS 62
                 679*********************55...******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-11879IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.231163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-91480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-61762IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MNNNQASKSS STKVERRVVE KNRRNHLKLL YSKLYSLLPN QNPKEPLSVN EQIDEAINYI  60
KSKESKLQKA KEKKESLTGT RKRSNATAFV NVESMEPKTL NIESVRSTKA PQIQIHETGS  120
TVEVVLTSGL DNHQFIFYEI IRILDEEQAD VVYASFSTLG DTIFHVVRAE MDKSMLDFGA  180
ARITEKLNRF VNGSISDQEL RQDCSWDFKF EPAAIIGDQV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr026823.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028964294.11e-140transcription factor bHLH162-like
TrEMBLA0A498J6Q71e-135A0A498J6Q7_MALDO; Uncharacterized protein
STRINGXP_009336214.11e-162(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.18e-19bHLH family protein