PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr026903.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

WRKY

Protein Properties

Length: 200aa MW: 22321.3 Da PI: 6.5124

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr026903.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.7	6.6e-30	111	169	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYG+K+vk+s++pr+YY+C+ gC+vkk+ver+++d ++v++tYeg H+he Pbr026903.1 111 MDDGFKWRKYGKKSVKNSPNPRNYYKCSNGGCNVKKRVERDRDDASYVITTYEGVHTHE 169 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.6E-32	98	171	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-27	104	171	IPR003657	WRKY domain
PROSITE profile	PS50811	30.01	106	171	IPR003657	WRKY domain
SMART	SM00774	1.2E-34	111	170	IPR003657	WRKY domain
Pfam	PF03106	7.0E-24	112	169	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MDCLDEDPNP NPNHFVEKYI VDPPPMDFDE LSNYLMLDEY DFSRDHQDSS SSQSVGSSSQ 60 NFAGGAGSGG SSGGAASRNN MNVEVRRNKL NKVEGDNHRV AFRTKSELEV MDDGFKWRKY 120 GKKSVKNSPN PRNYYKCSNG GCNVKKRVER DRDDASYVIT TYEGVHTHES PSVVYYNQMH 180 ADPKNIWTLR ASSQSSASS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-24	99	171	2	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr026903.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009336366.1	1e-148	PREDICTED: probable WRKY transcription factor 51
Swissprot	Q93WU9	4e-50	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A498I2M6	1e-109	A0A498I2M6_MALDO; Uncharacterized protein
STRING	XP_009336366.1	1e-147	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1120	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	4e-45	WRKY DNA-binding protein 51

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]