PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr027004.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 178aa MW: 19621.8 Da PI: 7.4043

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr027004.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.1	8.3e-45	13	111	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el++++ Pbr027004.1 13 PCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVHPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELDETN 110 7*********************************************************************************************9987 PP DUF260 99 e 99 + Pbr027004.1 111 A 111 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.843	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.3E-44	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MASSSTSSYT NSPCAACKFL RRKCMPDCIF APYFPPEEPQ KFANVHKIFG ASNVSKLLNE 60 VHPHQREDAV NSLAYEAEAR MKDPVYGCVG AISVLQRQVI RLQKELDETN ADLVRYASSY 120 NHEILLPTSQ SERSSSSRVR GGGSLGQNSG SYFSPSWNRN AYGERNYERG GEGEGDI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-65	3	117	1	115	LOB family transfactor Ramosa2.1
5ly0_B	2e-65	3	117	1	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr027004.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009370382.1	1e-131	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_009370383.1	1e-131	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_009377173.1	1e-131	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_009377174.1	1e-131	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_018506014.1	1e-131	PREDICTED: LOB domain-containing protein 25-like
Swissprot	Q8L8Q3	2e-70	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A498HJC5	4e-94	A0A498HJC5_MALDO; Uncharacterized protein
STRING	XP_009370382.1	1e-130	(Pyrus x bretschneideri)
STRING	XP_009377173.1	1e-130	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1091	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	2e-68	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]