PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr027421.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ARF
Protein Properties Length: 696aa    MW: 77593.9 Da    PI: 7.0689
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr027421.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.3e-23127227198
                  EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  f+k+lt sd++++g +++ +k+a+e+     +++ + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +++el+
  Pbr027421.1 127 FCKILTASDTSTHGGFSVLRKHATEClppldMNQATPTQELIAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGDNGELR 222
                  99****************************9555556679************************************************..3489999* PP

                  EEEE- CS
           B3  94 vkvfr 98 
                  v+v+r
  Pbr027421.1 223 VGVRR 227
                  ***98 PP
2Auxin_resp92.19.6e-31253332183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha+ tk+ F v+ +Pr+  s+F+v ++k+++a+++k+s+GmRf+m+fe+e+s+err++Gt+v v dl++ +W++SkWrsLk
  Pbr027421.1 253 ASHALMTKTLFVVYSKPRT--SQFIVCLNKYLEAINNKFSLGMRFRMRFEGEESPERRFTGTIVEVGDLSS-QWSESKWRSLK 332
                  6899**************6..9**********************************************777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-41118242IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.98E-41119256IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.2E-22127229IPR003340B3 DNA binding domain
PfamPF023621.7E-21127227IPR003340B3 DNA binding domain
CDDcd100174.31E-20127227No hitNo description
PROSITE profilePS5086312.196127229IPR003340B3 DNA binding domain
PfamPF065071.3E-28253332IPR010525Auxin response factor
PfamPF023093.8E-7568617IPR033389AUX/IAA domain
SuperFamilySSF542771.96E-10575657No hitNo description
PROSITE profilePS5174522.454581662IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MAHLECESSI SRAETGLRGD DLYTELWKLC AGPLVDVPRP GDKVFYFPQG HMEQLEASTN  60
QELNQQIPLF NLPSKILCSV VNIRLLAEQE TDEVYAQITL HPEADQSEPT SPDPCKPEGP  120
KPTVHWFCKI LTASDTSTHG GFSVLRKHAT ECLPPLDMNQ ATPTQELIAK DLHGYEWKFK  180
HIFRGQPRRH LLTTGWSTFV TSKRLVAGDA FVFLRGDNGE LRVGVRRLAR QQSQMPSSVI  240
SSTSMHLGVL ATASHALMTK TLFVVYSKPR TSQFIVCLNK YLEAINNKFS LGMRFRMRFE  300
GEESPERRFT GTIVEVGDLS SQWSESKWRS LKVQWDEHAA VQRPERVSPW DIELFVASAP  360
LNLAQPVVKS KRSRPVEIAS SEVTTNSAAS AFWYHSSPQT AELNQLGGVP EVQSSSSQIV  420
WPMRQKESNS SSYSSSRVCS DGIWPSSPNV NVSLSLFPDS KESNKNVTMG SVLSSFASPI  480
TSKPNNVPMH DQVEKGKKSG TSGFRLFGCN LTNNTKTTCP QEIEQVFKTM PSGAKGPIPA  540
DAFGTDQILD VSKLSKEQKQ VILEASPKET QGKQGSTLST RTRTKVQMQG VAVGRAVDLT  600
ALKGYDHLID ELEKMFEIKG ELRPQNKWAV VFTDDENDMM LMGDDQWPDF CKLVKKIFIY  660
SSDEVQKMNR LKLQSSSLDC EGTVSMDSER RSEHD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1701636213356Auxin response factor 1
4ldw_A1e-1701636213356Auxin response factor 1
4ldw_B1e-1701636213356Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr027421.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6272650.0AB627265.1 Malus x domestica mRNA, microsatellite: MEST120, clone: FLW01_31_E06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009336755.10.0PREDICTED: auxin response factor 18 isoform X1
RefseqXP_009336757.10.0PREDICTED: auxin response factor 18 isoform X1
RefseqXP_009375410.10.0PREDICTED: auxin response factor 18 isoform X1
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLA0A498KKI80.0A0A498KKI8_MALDO; Auxin response factor
STRINGXP_009336755.10.0(Pyrus x bretschneideri)
STRINGXP_009375409.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61830.10.0auxin response factor 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]