PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr027475.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 294aa    MW: 33093.6 Da    PI: 6.7199
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr027475.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.3e-06125144120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++Cp C+k+F+r  n++ H+
  Pbr027475.1 125 FSCPVCSKTFNRYNNMQMHM 144
                  89*****************9 PP
2zf-C2H213.90.00016210232123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +Cgk+F  + + ++H +++
  Pbr027475.1 210 FGCRKCGKPFAVRGDWRTHEKNC 232
                  56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.85E-5121147No hitNo description
PROSITE profilePS5015710.242125152IPR007087Zinc finger, C2H2
PfamPF128740.001125144No hitNo description
Gene3DG3DSA:3.30.160.601.9E-6125144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.054125147IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
SMARTSM00355220173205IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.81E-6193230No hitNo description
Gene3DG3DSA:3.30.160.608.4E-5196230IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355140210230IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MQTPFTSTTI DEDFQDEGSI FLSLGPPGQD NHVPKQYHLI YHHQSASSTQ PDHHQTFYHD  60
YPNPNPDTED GTITVALNIE PPTSGGGRPS SSFISNPNHS HIGGPVEGQY WIPSPAQILV  120
GPTQFSCPVC SKTFNRYNNM QMHMWGHGSQ YRKGPESLRG TKPASSVLRL PCYCCAEGCK  180
NNIEHPRSRP LKDFRTLQTH YKRKHGTKPF GCRKCGKPFA VRGDWRTHEK NCGKLWFCIC  240
GSDFKHKRSL KDHVRGFGDG HAPYAVELCT EPEEEDHMDD EDDDNNEDDL VIN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr027475.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009336615.10.0PREDICTED: zinc finger protein WIP6
SwissprotQ9FX681e-115ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A498I8T90.0A0A498I8T9_MALDO; Uncharacterized protein
STRINGXP_009336615.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-114C2H2-like zinc finger protein