PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr027548.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 234aa    MW: 26301.6 Da    PI: 9.8755
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr027548.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.91.7e-203078149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 kr+e+k +r+vtfskR+ g++ KA ELSvL++ae a i++ss+gk++ +
  Pbr027548.1 30 KRVEDKNKRHVTFSKRKRGLFNKAAELSVLTGAETAAIVVSSNGKVFCF 78
                 799******************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-282281IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.022282IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-252395IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-182444IPR002100Transcription factor, MADS-box
PfamPF003196.6E-203178IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-184459IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-185980IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MAKTPDNKIT DIGTTNGKKE SKGRRRVEIK RVEDKNKRHV TFSKRKRGLF NKAAELSVLT  60
GAETAAIVVS SNGKVFCFGS PSPDTVIERY LSDNTFLLPA GQSDNHLQNN NIHHSSNKKQ  120
IEDYVEASRR LKEAKVLKGG KKNNSNNNGG DGGCSYGWWE RPIGMMTSLE EFEEYRDALY  180
KLKHNVEVRT NQMIRETSPS THFSPLLFMD DIWNSPGLSH GQGFMAPEFN FFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A2e-17987181PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B2e-17987181PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr027548.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008380815.21e-155agamous-like MADS-box protein AGL29
TrEMBLA0A498J0491e-153A0A498J049_MALDO; Uncharacterized protein
STRINGXP_008380815.11e-143(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1658149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-22AGAMOUS-like 62