PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr027596.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 448aa    MW: 51086.9 Da    PI: 8.2683
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr027596.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.81e-066586223
                 EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                 +C+ Cg +F+ + +Lk+H+++H
  Pbr027596.1 65 TCEECGATFKKPAYLKQHMQSH 86
                 6*******************99 PP
2zf-C2H219.23.4e-06164188123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  y+C+  dC+ sF+rk++L+rH+  H
  Pbr027596.1 164 YVCSvgDCHSSFRRKDHLNRHLLQH 188
                  99*******************9887 PP
3zf-C2H213.30.00025232258123
                  EEET..TTTEEESSHHHHHHHHHH..T CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt..H 23 
                  ++C+   Cgk+F   s L++H ++  H
  Pbr027596.1 232 HVCQeiGCGKVFQFASKLRKHENSyvH 258
                  799******************987555 PP
4zf-C2H217.79.9e-06324348223
                  EET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                  kC+   C ++Fs+ksnL++H ++ H
  Pbr027596.1 324 KCSynGCLQTFSTKSNLTQHVKVvH 348
                  688889***************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355511942IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.36E-76386No hitNo description
Gene3DG3DSA:3.30.160.605.7E-56487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00296486IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1156491IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SuperFamilySSF576671.36E-7159188No hitNo description
Gene3DG3DSA:3.30.160.605.2E-8161190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0014164188IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.596164193IPR007087Zinc finger, C2H2
PROSITE patternPS000280166188IPR007087Zinc finger, C2H2
SuperFamilySSF576673.86E-5191219No hitNo description
Gene3DG3DSA:3.30.160.600.001191215IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.471193223IPR007087Zinc finger, C2H2
SMARTSM003550.013193218IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280195218IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.1E-6228253IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.076232263IPR007087Zinc finger, C2H2
SMARTSM003550.35232258IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280234258IPR007087Zinc finger, C2H2
SMARTSM003555.2264289IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280266289IPR007087Zinc finger, C2H2
SMARTSM0035531292313IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.8E-6303345IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.0E-9303362No hitNo description
PROSITE profilePS5015712.424323353IPR007087Zinc finger, C2H2
SMARTSM003550.0015323348IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280325348IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-5347377IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.1354380IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280356380IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDNEEADQKV PIFIDIRRYY CEFCGICRSK KALIASHILD HHKGEMDVEK EAGGEGEGEK  60
IKSNTCEECG ATFKKPAYLK QHMQSHSLEH WIPHKELQNA RGFGLEWTST RWETSCEAPS  120
SEPQSRTVQF ENSKMRESFD LSGPVTGGRP PVKLHQASLN HRPYVCSVGD CHSSFRRKDH  180
LNRHLLQHQG KLFKCPIENC NRGFVCQGNM SRHVKELHND DGTYVGRGQK QHVCQEIGCG  240
KVFQFASKLR KHENSYVHLD SVEAFCSEPG CMQYFTNEQC FKAHILSSHQ HVTCEICGSK  300
KLKRNIKRHL LAHKGGAPAV ERIKCSYNGC LQTFSTKSNL TQHVKVVHLE DKPFVCSFSD  360
CGMRFAYKHV RDNHEKTGRH VYAYGDFVEA DEQFQSRPRG GCKRKCPSVE MLLRKRVTPP  420
DQLGLEPEYL SWLLAQDAED GNRVMAF*
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr027596.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008386551.10.0transcription factor IIIA-like isoform X2
RefseqXP_028965717.10.0transcription factor IIIA-like isoform X2
SwissprotQ84MZ41e-107TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A498HYA10.0A0A498HYA1_MALDO; Uncharacterized protein
STRINGXP_009336931.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-109transcription factor IIIA