PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr027651.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

SRS

Protein Properties

Length: 328aa MW: 33393.4 Da PI: 7.8278

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr027651.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	219	1e-67	108	268	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaeskke 99 s t++CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpaa+rrerq + aaa a +++ +++++k++r l ++q++ s+t++s+++++++ Pbr027651.1 108 SSTMTCQDCGNQAKKDCTHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMSAAAGGGAGSNSgSTSSAKKPR-LVGASQTTPSHTSTSNTTPPRS 204 6799***********************************************9999999999884455555555.569999************ PP DUF702 100 letss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +tss lP +v+++avf+cvrv++v+dge+e+aY+++v+i+GhvfkG+LydqG++ Pbr027651.1 205 YDTSSshqdagfkdpLPGQVRAPAVFKCVRVTAVEDGEDEYAYHAVVKINGHVFKGFLYDQGVD 268 999*******************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.6E-61	110	268	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.3E-27	112	154	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	8.7E-28	220	267	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MSNVDDDDED THTPAGMSMG MGMSMGMMSG GHQRNNRSSS AAGGGGIQLW QQNPPHFFKK 60 NHHEAAVTTN LGGIHLNQDG DGGGRGGGGG GGGNNIMNAG SAAASSGSST MTCQDCGNQA 120 KKDCTHRRCR TCCKSRGFDC ATHVKSTWVP AARRRERQLM SAAAGGGAGS NSGSTSSAKK 180 PRLVGASQTT PSHTSTSNTT PPRSYDTSSS HQDAGFKDPL PGQVRAPAVF KCVRVTAVED 240 GEDEYAYHAV VKINGHVFKG FLYDQGVDGR EGFPDISELH LGGGGTTSGG NGGGRNGASS 300 PILDPSDVYA ASGAGLLGGS NFGNPIN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	90	GGRGGGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr027651.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008363042.2	0.0	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	1e-82	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A498KCA6	0.0	A0A498KCA6_MALDO; Uncharacterized protein
STRING	XP_009337064.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	2e-70	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]