PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr027720.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Nin-like

Protein Properties

Length: 347aa MW: 39837.8 Da PI: 9.6828

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr027720.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.6	4.5e-27	203	252	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++isl+dl+kyF+lpi +A+++L+v+lTvLK++CR++GI+RWPhRkiksl Pbr027720.1 203 ASISLSDLAKYFDLPIVEASRNLNVGLTVLKKKCREFGIPRWPHRKIKSL 252 78**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.702	187	272	IPR003035	RWP-RK domain
Pfam	PF02042	4.5E-22	205	252	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MDSCDCDPHL LRSLLVFKNT INQELIRSLH VYGLDEGKRN EVEREFVFRE NGLYVELSAE 60 PVLRLMKFPA SQVLQGHVNG CWVCILAFHE NSPPDFTCIP SVLSVSRNPK LKAIPRLSND 120 LQMIFELSCK TDDKKSLQRS QEETSQGSND SNHKSRRWPI LDLDLNSLPS PVTMSESSED 180 QESGRSSPGI TEKKRRAPSG RIASISLSDL AKYFDLPIVE ASRNLNVGLT VLKKKCREFG 240 IPRWPHRKIK SLDSLIRDLQ EETEIQQKEN KAAALAVLKR QRMLEREXXX XXXXXXXXXX 300 XXERESIERR PFLEMKTETK RFRQDVFKRR HRARALRSQG LSTSAN*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MDSCDCDPHL LRSLLVFKNT INQELIRSLH VYGLDEGKRN EVEREFVFRE NGLYVELSAE  60
PVLRLMKFPA SQVLQGHVNG CWVCILAFHE NSPPDFTCIP SVLSVSRNPK LKAIPRLSND  120
LQMIFELSCK TDDKKSLQRS QEETSQGSND SNHKSRRWPI LDLDLNSLPS PVTMSESSED  180
QESGRSSPGI TEKKRRAPSG RIASISLSDL AKYFDLPIVE ASRNLNVGLT VLKKKCREFG  240
IPRWPHRKIK SLDSLIRDLQ EETEIQQKEN KAAALAVLKR QRMLEREXXX XXXXXXXXXX  300
XXERESIERR PFLEMKTETK RFRQDVFKRR HRARALRSQG LSTSAN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr027720.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018498607.1	0.0	PREDICTED: protein RKD5-like isoform X2
TrEMBL	A0A498KFD7	0.0	A0A498KFD7_MALDO; Uncharacterized protein
STRING	XP_009344678.1	0.0	(Pyrus x bretschneideri)
STRING	XP_008367933.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9646	30	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-81	RWP-RK domain-containing protein