PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr027726.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 218aa    MW: 24087.4 Da    PI: 4.3846
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr027726.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-191665255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +ykGVr +k +g+Wv+eIr p++   r r++lg+++t+e+Aa+a +aa  +l+g
  Pbr027726.1 16 KYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTPEKAARAFDAALFCLRG 65
                 8*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.61E-301675No hitNo description
PROSITE profilePS5103222.3921673IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-211674IPR016177DNA-binding domain
PfamPF008479.4E-121665IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-291674IPR001471AP2/ERF domain
SMARTSM003801.4E-331679IPR001471AP2/ERF domain
PRINTSPR003671.4E-91728IPR001471AP2/ERF domain
PRINTSPR003671.4E-93955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MLNQTSGEPS ERNDVKYKGV RKRKWGKWVS EIRLPNSRER IWLGSYDTPE KAARAFDAAL  60
FCLRGRTAKF NFPDNPPDIP GGRSLSPAEI QVEAARFANS EIPRSHQSMS APQAECQSLS  120
ELQAESQSPS LSEGSGTAFM DTDFQVTPNE SFSDLFGTFG SGNYATEYGL FPGFDEMNGQ  180
FFSPASAAPT PAVDYYAEEN LDGQFFNPAQ ESFLWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1516731472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11723KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr027726.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324300.0GU732430.1 Malus x domestica AP2 domain class transcription factor (AP2D6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018498625.11e-160PREDICTED: ethylene-responsive transcription factor ERF017
SwissprotQ84QC21e-58ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A2P1MA401e-155A0A2P1MA40_MALDO; Ethylene respone factor 17-3s
STRINGXP_009337182.11e-159(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.14e-57ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]