PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr027898.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 249aa    MW: 27657.2 Da    PI: 10.034
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr027898.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.77.7e-171198197
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                 ffk l     ++ + +++p +f + + +++++ k+ ++e+ +  sWev +  r + g+ ++++GW+eFvk+++Lk+g+f+vFk+ gr+ f  +v v+
  Pbr027898.1 11 FFKPL--IPGFEYA-ISIPASFSQ-N-LNERNAKKAVIESCQ-GSWEVVV-ARTGEGTLYFEGGWEEFVKDHNLKVGEFLVFKHLGRMVF--HVNVY 98
                 55666..4456665.99*****84.4.445566677777755.59*****.35555559***************************9999..66664 PP
2B336.68.2e-121362191187
                  HHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE...EEETTE..EEE-.......TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3  11 lksgrlvlpkkfaeehggkkeesktltledesg.rsWevkl.iyrkksgr..yvlt.......kGWkeFvkangLkegDfvvFkldgr 87 
                   +++ +++p  f+++hg+  ++  +++l+ +    +W v+l ++++++++  +  +       +GW +F ++ngLk gD + F l++ 
  Pbr027898.1 136 PNKCYVTIPSGFVKAHGLGDRK--KMILKVPFVrGKWPVELgTWQGGKRGaaI--SlrtairtRGWYKFYEDNGLKIGDCCKFVLKEV 219
                  345999**********888555..677777544379*****556555555563..33355666********************98754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.3238101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.7E-209101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-189107IPR015300DNA-binding pseudobarrel domain
CDDcd100171.45E-16998No hitNo description
SMARTSM010194.6E-1611101IPR003340B3 DNA binding domain
PfamPF023622.1E-132295IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.3E-14118218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-15119217IPR015300DNA-binding pseudobarrel domain
CDDcd100172.57E-10124218No hitNo description
SMARTSM010194.2E-4125234IPR003340B3 DNA binding domain
PROSITE profilePS508639.389126234IPR003340B3 DNA binding domain
PfamPF023623.0E-9134219IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009941Cellular Componentchloroplast envelope
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MAGSPPFPRR FFKPLIPGFE YAISIPASFS QNLNERNAKK AVIESCQGSW EVVVARTGEG  60
TLYFEGGWEE FVKDHNLKVG EFLVFKHLGR MVFHVNVYEP LGCEKVFPPS PPPAAAPSTS  120
SPLFFLKSIS ETHSLPNKCY VTIPSGFVKA HGLGDRKKMI LKVPFVRGKW PVELGTWQGG  180
KRGAAISLRT AIRTRGWYKF YEDNGLKIGD CCKFVLKEVP DSKSKPVIME VDIKRMVLGS  240
SKAVVNFE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr027898.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018502884.10.0PREDICTED: B3 domain-containing protein REM9
STRINGXP_009355809.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14574917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.12e-23B3 family protein