PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr027978.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 166aa    MW: 17499.4 Da    PI: 10.1435
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr027978.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.0009139162123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  ++C+ C+ksF++   L +H +  H
  Pbr027978.1 139 HSCKPCNKSFNSDGALSSHKKAkH 162
                  68999**************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.427139165IPR007087Zinc finger, C2H2
PfamPF128742.3E-4140160No hitNo description
PROSITE patternPS000280141162IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MRRTILVFTD SEEDLPLNFT DNGKVVAAKP APPKTNAVKP ESSGKQKDML GADSSDEDDD  60
NSEEEEETPT PKKNSKKRPN ESAPKTPVSA KKAKQVTPQK TDGKKGAHTA TPHPAKGGKT  120
PATSDKSKPQ TPKSAGGDHS CKPCNKSFNS DGALSSHKKA KHSAK*
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr027978.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009337401.12e-80PREDICTED: histone deacetylase HDT1-like isoform X1
SwissprotQ8LJS21e-26HDT1_SOYBN; Histone deacetylase HDT1
TrEMBLA0A498IIY61e-80A0A498IIY6_MALDO; Uncharacterized protein
STRINGXP_009337401.16e-80(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.19e-13histone deacetylase 2C