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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Pbr028076.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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| Family | ARF | ||||||||
| Protein Properties | Length: 897aa MW: 98403.8 Da PI: 5.9349 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 77.9 | 1.1e-24 | 140 | 241 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
f+k+lt sd++++g +++p++ ae+ ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F ++++ +
Pbr028076.1 140 FCKTLTASDTSTHGGFSVPRRAAEKLfppldftMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVGAKRLRAGDSVLFI--RDEKSQ 233
99*********************999*****954444.4.48************************************************..457777 PP
.EEEEE-S CS
B3 92 lvvkvfrk 99
l+++v+r+
Pbr028076.1 234 LLIGVRRA 241
8****997 PP
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| 2 | Auxin_resp | 114.4 | 1e-37 | 266 | 349 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
aahaas++s F+++YnPra++seFvv+++ ++ka++ +++s+GmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
Pbr028076.1 266 AAHAASNRSSFTIFYNPRACPSEFVVPLATFQKAVYgTQLSIGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 349
79**********************************9*********************************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 4.45E-47 | 128 | 269 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 6.3E-42 | 132 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 6.29E-23 | 139 | 240 | No hit | No description |
| Pfam | PF02362 | 2.2E-22 | 140 | 241 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 7.9E-25 | 140 | 242 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 13.155 | 140 | 242 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 8.2E-33 | 266 | 349 | IPR010525 | Auxin response factor |
| SuperFamily | SSF54277 | 2.94E-9 | 773 | 861 | No hit | No description |
| PROSITE profile | PS51745 | 24.764 | 782 | 866 | IPR000270 | PB1 domain |
| Pfam | PF02309 | 5.6E-7 | 827 | 868 | IPR033389 | AUX/IAA domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009733 | Biological Process | response to auxin | ||||
| GO:0009908 | Biological Process | flower development | ||||
| GO:0009942 | Biological Process | longitudinal axis specification | ||||
| GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
| GO:0048364 | Biological Process | root development | ||||
| GO:0048507 | Biological Process | meristem development | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0016020 | Cellular Component | membrane | ||||
| GO:0042802 | Molecular Function | identical protein binding | ||||
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 897 aa Download sequence Send to blast |
MMGSVEEKLK TGCLLDEMKL LKELQDHSGS RKAINSELWH ACAGPLVCLP QVGGLSYYFP 60 QGHSEQVAVS TKRTATSQIP NYPNLPSQLL CQVQNVTLHA DKETDEIYAQ MILKPVNSEK 120 DVFPVSDFRT KPSKHPSEFF CKTLTASDTS THGGFSVPRR AAEKLFPPLD FTMQPPTQEL 180 VVRDLHDNTW TFRHIYRGQP KRHLLTTGWS VFVGAKRLRA GDSVLFIRDE KSQLLIGVRR 240 ANRQQTTLPS SVLSADSMHI GVLAAAAHAA SNRSSFTIFY NPRACPSEFV VPLATFQKAV 300 YGTQLSIGMR FGMMFETEES GKRRYMGTIV GISDLDPLRW PGSKWRNLQI EWDEPGCCDK 360 QNRVSSWEIE TPESLFIFPS LTSSLKRPMH SGFLGAETEW GNMIKRPFIR VPEIGNRNSF 420 PYPISNLCSE QLVNMLMKPQ LANHAGTLAA LRRESASNAD SVVDMKAMHA KINQKNPADG 480 VNANAPSHEI PPGKLNAAAK FGSQTPVGNG TEKMKLEPEF SADQLSQLNS VGHGIDDKLA 540 TGFASPYNLV NQLTFANQNQ DAAQLQTSPR PMQPPLESLL YHSQTDLPHS DFNGMNSSLP 600 FLDNDECMFY SPCQPFSGAL RSPGPLSAFG LPDSSAVLTE ANSSLTSIGQ DMWDNTIINS 660 SSLRDLSDES NNQSGIYGCP SVDVGSGLST VVDPSVSSTI LNDFSTLKNA NFQNSSDCLV 720 RNLSSSQDFQ SQITSASLGD SQAFSRQDLA DTSGGTSSSN VDLDESSLLQ NSSWHKVVVP 780 VRTYTKVQKT GSVGRSIDVT NFRNYEELCS AIECMFGLKG LLNDPRGSGW KLVYVDYEND 840 VLLVGDDPWE EFVGCVRCIR ILSPTEVQQM SEEGMKLLNS AAMQGMNGTM SEGGRP* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldu_A | 0.0 | 1 | 374 | 1 | 392 | Auxin response factor 5 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. | |||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00153 | DAP | Transfer from AT1G19850 | Download |
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| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Pbr028076.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009337659.1 | 0.0 | PREDICTED: auxin response factor 5-like isoform X1 | ||||
| Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
| TrEMBL | A0A498JBE7 | 0.0 | A0A498JBE7_MALDO; Auxin response factor | ||||
| STRING | XP_009337659.1 | 0.0 | (Pyrus x bretschneideri) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF8991 | 32 | 41 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G19850.1 | 0.0 | ARF family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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