PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr028202.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 179aa    MW: 19299.7 Da    PI: 9.4873
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr028202.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00153052123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C++ F++   L  H  +H
  Pbr028202.1 30 FECKTCNRQFPSFQALGGHRASH 52
                 89**********99999998887 PP
2zf-C2H212.40.0004884106123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  F+    L  H+r+H
  Pbr028202.1  84 HECNICGLEFPVGQALGGHMRRH 106
                  79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.51E-92852No hitNo description
PfamPF139122.9E-132954IPR007087Zinc finger, C2H2
SMARTSM003550.163052IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8273057IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
SuperFamilySSF576676.51E-979106No hitNo description
PfamPF139121.7E-1083108IPR007087Zinc finger, C2H2
SMARTSM003550.1784106IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.68384106IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MANCLMLLSR GINNNANQYD SFSVSPNRVF ECKTCNRQFP SFQALGGHRA SHKKPRLTGS  60
SGEGNSNSSD QSLSQGSPPK PKTHECNICG LEFPVGQALG GHMRRHRAAL SGCNTTSNVH  120
ERYSSSNSLN PQPAQVFQVL KKTNSGRRAM CLDLNLTPLE NDLETLQLGK AAPLVGFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr028202.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009337587.11e-129PREDICTED: zinc finger protein ZAT12-like
TrEMBLA0A498KN701e-125A0A498KN70_MALDO; Uncharacterized protein
STRINGXP_009337587.11e-129(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-37C2H2 family protein